PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP00900_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 227aa    MW: 23883.5 Da    PI: 6.6336
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP00900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.3e-3866197289
                            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 
                                    a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlqqa+pai+++tgt++++as+  +a++   
  GSMUA_AchrUn_randomP00900_001  66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGYKSDGETIRWLLQQAEPAIIAATGTGTIPASALaSAAAAGP 145
                                    789*************************************************************9999966622111111 PP

                            TCP  81 sasnsssg................................................k 89 
                                    ++     +                                                +
  GSMUA_AchrUn_randomP00900_001 146 TG-----PmsfasllaghgqqlpglelglsqdahsgalnpqalnqfysqighvmgaA 197
                                    11.....12222333444433444444444444444445555555555555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3171195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.93872126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPKDSSKQP QYVSRLPQER SLPLSHETDA AAAAESSDLV PAAASERHGG LQVVAAEKDE  60
QRKQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGYKSDGE TIRWLLQQAE  120
PAIIAATGTG TIPASALASA AAAGPTGPMS FASLLAGHGQ QLPGLELGLS QDAHSGALNP  180
QALNQFYSQI GHVMGAAGSA GSAGSGQLQH QQQQQVFSAE DDSQESE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385480.17e-87PREDICTED: transcription factor TCP20-like
RefseqXP_009385479.17e-87PREDICTED: transcription factor TCP20-like
RefseqXP_009385477.17e-87PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD54e-45TCP20_ARATH; Transcription factor TCP20
TrEMBLM0U5A21e-163M0U5A2_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP00900_0011e-163(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-43TCP family protein